Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848570.1_cds_XP_016510453.1_23288
CDS Infomation

[gene=LOC107827767] [db_xref=GeneID:107827767] [protein=LOW QUALITY PROTEIN: scarecrow-like transcription factor PAT1] [exception=unclassified translation discrepancy] [protein_id=XP_016510453.1] [location=complement(join(12020..12313,12316..13221))] [gbkey=CDS]
Sequence

ATGACCTCCCCAGAAATTGGCTGTTGGAGACAAATGTTGGAGGCGATACCTAGAGGGGAT
TTAAAACATGTGCTCATTGCGTGTGCAAAAGCAGAATCAGATGGTGATTTGCTTACAGCT
CAGTGGTTGATATCAGAGTTGCGTCAAATGGTGTCAGTGTCAGGGGAACCAATTCAGCGA
CTCGGAGCATACATCCTTGAAGGCCTTGTAGCAAGGTTAGCGGCATCAGGAAGTTCCATA
TACAAATCCCAAAGATGCAAAGAACCAGCTAGTTTTGAACTGCTTTCATATATGCATATT
CTTCATGAAGTTTGCCCCTACTTCAAATTTGGATACATGTCGGCAAATGGTGCCATTGCA
GAAGCAATGAAGGATGAACAAAGAGTTCATATCATTGATTTCCAAATTTCTCAAGGGAGT
CAGTGGGTTACTCTAATCCAAGCTTTTGCAGCTCGGCCTGGAGGTCCACCTCATATCCGC
ATAACGGGTATTGATGATTCCAAATCAGCCTATGCGCGTGGAGGAGGGCTTAATATTGTT
GGCAAGAGGCTTTCTACACTTGCTGAGTCCTTCAAGGTGCCTTTTGAGTTTCATGCTGCC
GCCATATCTACTTCTGATGTTCAGCTAGAAAACCTTGGAATTCGACCTGGCGAAGCACTG
GCAGTAAATTTTGCATTTGTGTTGCATCACATGCCAGACGAAAGTGTGAGCACCGAAAAT
CATCGGGATCGACTGATACGGCTGGTTAAGAGCTTGAATCCCAAGGTGGTTACTCTTGTT
GAGCAAGAATCTAATACAAACACTGCAGCTTTCTTTCCTCGATTCCTTGAAACGTTAGAT
TACTATACTGCCATGTTTGAATCAATTGATGCGACACTCCNTTTGAATCAATTGATGCGA
CTCTCCAGGGCGCATAAGGAGCGCATCAATGTTGAGCAGCATTGTTTGGCAAAAGATATT
GTTAACATCATCGCCTGCGAGGGAATTGAGAGGGTGGAGCGGCATGAGCTTCTTGGTAAG
TGGAAGTCACGGTTTAGAATGGCTGGTTTCAGCCCATATCCTTTGAGTTCATTGGTGAAT
TCTACTATCAAAGCATTGGTAGAAAACTACTGTGACAAATATAGGCTTGAAGAAAGAGAT
GGAGCTTTGTACCTCGGTTGGATGAACAGAGATTTGGTTGCTTCTTGTGCATGGAAGTAG

Peptide Sequence

PEP ID

XP_016510453.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: scarecrow-like transcription factor PAT1 [Nicotiana tabacum]
Sequence

MTSPEIGCWRQMLEAIPRGDLKHVLIACAKAESDGDLLTAQWLISELRQMVSVSGEPIQR
LGAYILEGLVARLAASGSSIYKSQRCKEPASFELLSYMHILHEVCPYFKFGYMSANGAIA
EAMKDEQRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSKSAYARGGGLNIV
GKRLSTLAESFKVPFEFHAAAISTSDVQLENLGIRPGEALAVNFAFVLHHMPDESVSTEN
HRDRLIRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDATLXLNQLMR
LSRAHKERINVEQHCLAKDIVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVN
STIKALVENYCDKYRLEERDGALYLGWMNRDLVASCAWK

Transcript Sequence

Gene sequence data has not been registered.